Getting into 'system' menus (that is the 'secret handshake' you describe), accessing the Nion via telnet and tinkering, and playing with the compactflash are --very-- dangerous. You can pretty easily 'brick' a nion with no way or recovering it unless it's sent back to the factory (and that means Mississippi, not just the local distributor!).
There are zero safeguards against someone tinkering with the running linux. Therefore I would suggest you don't even mention it to anyone ...
For the compactflash, /if/ you have to tinker, you need to use the proper tools. Do not try to do a 'filesystem' copy, use a 'block' copy. There is a tool called 'dd' (on windows I think it's called WinDD or similar) that will allow you to image a working compactflash, and write it back on a new one, This is the only 'approved' way to restore a Nion's filesystem if it's broken. It might be valuable information for 'in the field' repairs...
Alternatively, you can always send the box to be serviced...